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27 June 2011 - Tasmanian Devil browser released
The Tasmanian Devil has been added to the browser. It contains the reads
for Cedric, Spirit, and Spirit's tumor. Also a mirror of the opossum
browser has been added, and includes 2 tracks from the Tasmanian Devil data,
one for SNPs and another for SAPs to be viewed along with the opossum
annotations. This is published in:
- Miller, W. et al. Genetic diversity and population structure of the
endangered marsupial Sarcophilus harrisii (Tasmanian devil). Proceedings of
the National Academy of Sciences. (27 June 2011).
12 August 2010 - bedDetail track type expanded
The bedDetail format is now available for both custom and resident tracks
and allows the bed portion of the table to contain anywhere from 4 to 12
fields.
bedDetail format.
2 August 2010 - Added new custom track type
A new type of custom track has been added. The personal genome SNPs (pgSnp)
format is now available for custom tracks. This will do the coloring by
frequency/read count and the changing of alleles to match the views just as the
Genome Variants track does. It also computes amino acid changes for coding
SNPs and displays them on the details page along with the amino acid
properties. For more information see the
personal genome SNPs format.
22 July 2010 - Added new custom track type
A new type of custom track has been added. It extends the bed format adding
an ID and description to be used on the detail page displays. This format
is used by HbVar
query results when displayed in this browser. For more information see the
bedDetail format.
19 May 2010 - Presentation at Human Variome Meeting
SNP Data Integration Using Genome Browsers
18 Feb. 2010 - New personal genomes released
Two complete genomes and three exomes of southern African men have been
sequenced. Differences in these genomes from the human reference sequence
are now available in the Genome Variants track. Mapped sequence reads can be
viewed. Additional variation data include genotype results
(1M SNP Illumina arrays) and phenotype information from
PhenCode and
SNPedia. The
SNPs are available on both the Mar. 2006 and Feb. 2009 assemblies of the human
genome, but supporting tracks are only included for the Mar. 2006 assembly.
These results are published in:
-
Schuster S.C., et al. Complete Khoisan and Bantu genomes from southern Africa. Nature 463, 841-990 (18 February 2010).
PMID 20164927
For downloading large sets of data please use the
Galaxy library
or the FTP site for aligned reads.
December, 2009
New information from Penn State labs includes the ChIP-chip and ChIP-seq
data on GATA1 and TAL1 occupancy and histone modifications in a mouse
erythroid cell line (without and with the critical transcription factor
GATA1). These results are published in:
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